About
PSSweb is a web server for protein structural statistics. It is based on PSS, a stand-alone program for Unix-like environments. PSS is written in Perl, has a command-line interface, and is distributed under the GNU General Public License. The PSS web page is: [http://thomasgaillard.fr/pss].
PSSweb takes as input an ensemble of PDB files of protein structures, performs a multiple sequence alignment, and computes structural statistics for each position of the alignment. Different optional functionalities are proposed: structure superposition, Cartesian coordinate statistics, dihedral angle calculation and statistics, and a cluster analysis based on dihedral angles. An interactive HTML report containing a summary of results and figures is generated.
Citation
Please cite the following articles in a publication using PSSweb:
PSSweb: protein structural statistics web server
Thomas Gaillard, Roland H. Stote, and Annick Dejaegere
Nucleic Acids Res. 2016, 44, W401-W405.
doi:10.1093/nar/gkw332
Protein structural statistics with PSS
Thomas Gaillard, Benjamin B.L. Schwarz, Yassmine Chebaro, Roland H. Stote, and Annick Dejaegere
J. Chem. Inf. Model. 2013, 53, 2471-2482.
doi:10.1021/ci400233j
Support
We appreciate if users report bugs, feature requests, improvements, or patches to [thomas.gaillard@polytechnique.edu].
